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AFNI Class Notes 8/16/2019:

Helpful AFNI links:

Tools discussed:

  • Dicom-to-BRIK/NIFTI tools:
    • dicom_hdr: outputs dicom information to commandline
    • dcm2nii: part of MRIcro package that reads header details
    • dcm2niix: part of MRIcroGL package that fits BIDS 
    • to3d: afni, defaults to AFNI but can do NIFTI.
    • Dimon: afni function that reads dicom header designed for real time
  • Distortion correction:

Multiband on GE (pptx)