ANTS Class 1: 7/21/2016
Setting up ANTS (done on Taisen):
goto software location
git clone git://github.com/stnava/ANTs.git
mkdir antsbin
cd antsbin
ccmake ../ANTs
in cmake type "c" twice and then "g" [wait 30 minutes+]
make -j 4 [wait 30 minutes+]
Setting up in your path (per individual):
gedit .bash_profile &
export PATH=$PATH:$HOME/bin: ...:/mnt/nfs/software/antsbin/bin/:/mnt/nfs/software/ANTs/Scripts/
Setting up ANTsR (done on Taisen):
open R or rstudio
library( devtools )
install_github("stnava/ITKR")
install_github("stnava/ANTsR")
Primary ANTs and ANTsR resources:
ANTs: website pdf
ANTsR: website pdf
Building a Template: or mildly modified example.txt
./buildtemplateparallel.sh -r 1 -c 0 -d 3 -o PEtemplate_ *.nii.gz