AFNI 8 Class Notes: 6/30/2016
After you have Group Analysis Complete you can open the AFNI gui: afni
From here you can:
- set the Underlay and Overlay.
- open Define Overlay.
- select OLay and Thr.
- set the voxel-based p-value (right click on the T-t text).
- set the cluster-based (alpha threshold) based on ClustSim determinations.
- press Rpt to get table.
- change output file prefix.
- press SaveTable and SaveMsk.
- on Axial/Sagittal/Coronal views select Disp select jpg.
- press Sav1.jpg and enter good naming
To make nice surface rendered images in afni use an approach like: do_suma
To get make tables use an approach like: TableFillerTLRC or TableFillerMNI
To get extractions on the clusters use 3dROIstats -mask {output file prefix}_mask+tlrc ../Subjects/*BRIKS/*{task}+tlrc > output.ROIS.txt